PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_29253.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 186aa    MW: 20643.9 Da    PI: 4.6795
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_29253.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.3e-19352255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Rsa1.0_29253.1_g00001.1  3 SYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 52
                             6*****888.**********854...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-21360IPR016177DNA-binding domain
PROSITE profilePS5103223.617360IPR001471AP2/ERF domain
SMARTSM003801.6E-36366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-31361IPR001471AP2/ERF domain
PfamPF008473.7E-13352IPR001471AP2/ERF domain
CDDcd000183.68E-33462No hitNo description
PRINTSPR003677.7E-11415IPR001471AP2/ERF domain
PRINTSPR003677.7E-112642IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
PTSYRGVRKR SWGKWVSEIR EPKKKSRIWL GTYPTAEMAA RAHDVAALAI KGSSGFLNFP  60
ELSGLLPRPV SCSPKDIQAA AAKAAEATWQ EPVIHEKLAE ELSHSELSTA QSSTSSGFVF  120
SSDTSETSST VKESIEETVF DLPDLFTGGL INQNDAFRYY DSTSTWQLYG EDGVFRLEEP  180
FIWLDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-16460360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-16460663ATERF1
3gcc_A3e-16460663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893190.0AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116730.11e-102PREDICTED: ethylene-responsive transcription factor ERF035
SwissprotQ9M2102e-84ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLM4CTJ51e-102M4CTJ5_BRARP; Uncharacterized protein
STRINGBra007539.1-P1e-102(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.12e-77ERF family protein